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OpenCV is an open source project and all its code is open to everyone. You can download it, compile it, debug it, and do anything you want.

If I am not mistaken, OpenCV manager is just a service for applications that use OpenCV. For example if multiple applications use same version of OpenCV only one binary with OpenCV will be used (instead of binary per application). So I guess it is not easy to debug OpenCV code through OpenCV manager.