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Solved. The only thing I did after posting the above (ad after a weekend away from it) was to search and locate all the libraries related to CUDA.
On my 64bits system and OS (linux ubuntu 13.04) they are in
/usr/local/cuda/lib64
So appending the above line to
/etc/ld.so.conf
followed by
sudo ldconfig
did the trick. Simply had omitted this (it actually wasn't explicit in the installation guide I had followed). Now CPU examples I could compile can be executed.